Sboner, Andreas: search on Z-Library

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1

Novel YAP1-TFE3 fusion defines a distinct subset of epithelioid hemangioendothelioma

Antonescu, Cristina R., Le Loarer, Francois, Mosquera, Juan-Miguel, Sboner, Andrea, Zhang, Lei, Chen, Chun-Liang, Chen, Hsiao-Wei, Pathan, Nursat, Krausz, Thomas, Dickson, Brendan C., Weinreb, Ilan, R

Journal:

Genes, Chromosomes and Cancer

Year:

2013

Language:

english

File:

PDF, 908 KB

english, 2013

2

Clinical features of neuroendocrine prostate cancer

Conteduca, Vincenza, Oromendia, Clara, Eng, Kenneth W., Bareja, Rohan, Sigouros, Michael, Molina, Ana, Faltas, Bishoy M., Sboner, Andrea, Mosquera, Juan Miguel, Elemento, Olivier, Nanus, David M., Tag

Journal:

European Journal of Cancer

Year:

2019

File:

PDF, 1.39 MB

2019

3

Organoid Cultures Derived from Patients with Advanced Prostate Cancer

Gao, Dong, Vela, Ian, Sboner, Andrea, Iaquinta, Phillip J., Karthaus, Wouter R., Gopalan, Anuradha, Dowling, Catherine, Wanjala, Jackline N., Undvall, Eva A., Arora, Vivek K., Wongvipat, John, Kossai,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.76 MB

english, 2014

4

MAGI3–AKT3 fusion in breast cancer amended

Mosquera, Juan-Miguel, Varma, Sonal, Pauli, Chantal, MacDonald, Theresa Y., Yashinskie, Jossie J., Varga, Zsuzsanna, Sboner, Andrea, Moch, Holger, Rubin, Mark A., Shin, Sandra J.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.62 MB

english, 2015

5

MTSS1 is a metastasis driver in a subset of human melanomas

Mertz, Kirsten D., Pathria, Gaurav, Wagner, Christine, Saarikangas, Juha, Sboner, Andrea, Romanov, Julia, Gschaider, Melanie, Lenz, Florian, Neumann, Friederike, Schreiner, Wolfgang, Nemethova, Maria,

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.78 MB

english, 2014

6

Genomic Analysis of the Hydrocarbon-Producing, Cellulolytic, Endophytic Fungus Ascocoryne sarcoides

Gianoulis, Tara A., Griffin, Meghan A., Spakowicz, Daniel J., Dunican, Brian F., Alpha, Cambria J., Sboner, Andrea, Sismour, A. Michael, Kodira, Chinnappa, Egholm, Michael, Church, George M., Gerstein

Journal:

Year:

2012

Language:

english

File:

PDF, 616 KB

english, 2012

7

Identifying an ERG-positive Subclass with Clinical Progression Using Expression Profiling

Sboner, Andrea, Rubin, Mark A.

Journal:

European Urology

Year:

2013

Language:

english

File:

PDF, 147 KB

english, 2013

8

Recurrent NCOA2 gene rearrangements in congenital/infantile spindle cell rhabdomyosarcoma

Mosquera, Juan Miguel, Sboner, Andrea, Zhang, Lei, Kitabayashi, Naoki, Chen, Chun-Liang, Sung, Yun Shao, Wexler, Leonard H., LaQuaglia, Michael P., Edelman, Morris, Sreekantaiah, Chandrika, Rubin, Mar

Journal:

Genes, Chromosomes and Cancer

Year:

2013

Language:

english

File:

PDF, 1.16 MB

english, 2013

9

Personalized In Vitro and In Vivo Cancer Models to Guide Precision Medicine

Pauli, Chantal, Hopkins, Benjamin D., Prandi, Davide, Shaw, Reid, Fedrizzi, Tarcisio, Sboner, Andrea, Sailer, Verena, Augello, Michael, Puca, Loredana, Rosati, Rachele, McNary, Terra J., Churakova, Ye

Journal:

Cancer Discovery

Year:

2017

Language:

english

File:

PDF, 4.38 MB

english, 2017

10

Low Tristetraprolin Expression is Associated with Lethal Prostate Cancer

Gerke, Travis, Beltran, Himisha, Wang, Xiaodong, Lee, Gwo-Shu Mary, Sboner, Andrea, Karnes, R. Jeffrey, Klein, Eric A., Davicioni, Elai, Yousefi, Kasra, Ross, Ashley E., Börnigen, Daniela, Huttenhower

Journal:

Cancer Epidemiology Biomarkers & Prevention

Year:

2018

Language:

english

File:

PDF, 758 KB

english, 2018

11

The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer

Chakravarty, Dimple, Sboner, Andrea, Nair, Sujit S., Giannopoulou, Eugenia, Li, Ruohan, Hennig, Sven, Mosquera, Juan Miguel, Pauwels, Jonathan, Park, Kyung, Kossai, Myriam, MacDonald, Theresa Y., Font

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.38 MB

english, 2014

12

SLFN11 expression in advanced prostate cancer and response to platinum-based chemotherapy

Conteduca, Vincenza, Ku, Sheng-Yu, Puca, Loredana, Slade, Megan, Fernandez, Luisa, Hess, Judy, Bareja, Rohan, Vlachostergios, Panagiotis J, Sigouros, Michael, Mosquera, Juan Miguel, Sboner, Andrea, Na

Journal:

Molecular Cancer Therapeutics

Year:

2020

File:

PDF, 1.35 MB

2020

13

Clinical validation of an automated system for supporting the early diagnosis of melanoma

Andrea Sboner, Paolo Bauer, Giuseppe Zumiani, Claudio Eccher, Enrico Blanzieri, Stefano Forti, Mario Cristofolini

Journal:

Skin Research and Technology

Year:

2004

Language:

english

File:

PDF, 246 KB

english, 2004

14

Clonal evolution of chemotherapy-resistant urothelial carcinoma

Faltas, Bishoy M, Prandi, Davide, Tagawa, Scott T, Molina, Ana M, Nanus, David M, Sternberg, Cora, Rosenberg, Jonathan, Mosquera, Juan Miguel, Robinson, Brian, Elemento, Olivier, Sboner, Andrea, Beltr

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 2.17 MB

english, 2016

15

An automated procedure to properly handle digital images in large scale Tissue Microarray experiments

Rossana Dell’Anna, Francesca Demichelis, Mattia Barbareschi, Andrea Sboner

Journal:

Computer Methods and Programs in Biomedicine

Year:

2005

Language:

english

File:

PDF, 387 KB

english, 2005

16

A multiple classifier system for early melanoma diagnosis

Andrea Sboner, Claudio Eccher, Enrico Blanzieri, Paolo Bauer, Mario Cristofolini, Giuseppe Zumiani, Stefano Forti

Journal:

Artificial Intelligence in Medicine

Year:

2003

Language:

english

File:

PDF, 160 KB

english, 2003

17

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

Ashish Agarwal, David Koppstein, Joel Rozowsky, Andrea Sboner, Lukas Habegger, LaDeana W Hillier, Rajkumar Sasidharan, Valerie Reinke, Robert H Waterston, Mark Gerstein

Journal:

Year:

2010

Language:

english

File:

PDF, 3.56 MB

english, 2010

18

Aberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance

Shukla, Shipra, Cyrta, Joanna, Murphy, Devan A., Walczak, Edward G., Ran, Leili, Agrawal, Praveen, Xie, Yuanyuan, Chen, Yuedan, Wang, Shangqian, Zhan, Yu, Li, Dan, Wong, Elissa W.P., Sboner, Andrea, B

Journal:

Year:

2017

Language:

english

File:

PDF, 4.43 MB

english, 2017

19

Re: Stoehr et al. Lack of evidence for frequent MED12 p.L1224F mutation in prostate tumours from Caucasian patients. J Pathol 2013; 230: 453-456

Barbieri, Christopher E, Sboner, Andrea, Rubin, Mark A, Garraway, Levi A

Journal:

The Journal of Pathology

Year:

2013

Language:

english

File:

PDF, 50 KB

english, 2013

20

Genomics and Privacy: Implications of the New Reality of Closed Data for the Field

Greenbaum, Dov, Sboner, Andrea, Mu, Xinmeng Jasmine, Gerstein, Mark, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 116 KB

english, 2011

21

N-myc Downstream Regulated Gene 1 (NDRG1) Is Fused to ERG in Prostate Cancer

Pflueger, Dorothee, Rickman, David S., Sboner, Andrea, Perner, Sven, LaFargue, Christopher J., Svensson, Maria A., Moss, Benjamin J., Kitabayashi, Naoki, Pan, Yihang, de la Taille, Alexandre, Kuefer,

Journal:

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009

22

Robust-Linear-Model Normalization To Reduce Technical Variability in Functional Protein Microarrays

Sboner, Andrea, Karpikov, Alexander, Chen, Gengxin, Smith, Michael, Mattoon, Dawn, Freeman-Cook, Lisa, Schweitzer, Barry, Gerstein, Mark B.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 53 KB

english, 2010

23

217 Precision Sequencing Algorithm in Pediatric Neurosurgery

Greenfield, Jeffrey P, Maachani, Uday, Taha, Birra, Bareja, Rohan, Wang, Kenneth, Sboner, Andreas, Haussner, Therese, Hoffman, Caitlin E, Mason, Christopher E, Souweidane, Mark M, Elemento, Olivier, P

Journal:

Year:

2018

Language:

english

File:

PDF, 55 KB

english, 2018

24

The cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations

Huang, Linda, Fernandes, Helen, Zia, Hamid, Tavassoli, Peyman, Rennert, Hanna, Pisapia, David, Imielinski, Marcin, Sboner, Andrea, Rubin, Mark A, Kluk, Michael, Elemento, Olivier

Journal:

Journal of the American Medical Informatics Association

Year:

2016

Language:

english

File:

PDF, 803 KB

english, 2016

25

Identification of Molecular Tumor Markers in Renal Cell Carcinomas with TFE3 Protein Expression by RNA Sequencing

Pflueger, Dorothee, Sboner, Andrea, Storz, Martina, Roth, Jasmine, Compérat, Eva, Bruder, Elisabeth, Rubin, Mark A., Schraml, Peter, Moch, Holger

Journal:

Year:

2013

Language:

english

File:

PDF, 1.89 MB

english, 2013

26

Clinical features of neuroendocrine prostate cancer

Conteduca, Vincenza, Oromendia, Clara, Eng, Kenneth W., Bareja, Rohan, Sigouros, Michael, Molina, Ana, Faltas, Bishoy M., Sboner, Andrea, Mosquera, Juan Miguel, Elemento, Olivier, Nanus, David M., Tag

Journal:

European Journal of Cancer

Year:

2019

Language:

english

File:

PDF, 1.39 MB

english, 2019

27

MP41-06 SPOP MUTATIONS IN PROSTATE CANCER ACROSS DEMOGRAPHICALLY DIVERSE PATIENT COHORTS.

Blattner, Mirjam, Lee, Daniel, O'Reilly, Catherine, Park, Kyung, MacDonald, Theresa, Khani, Francesca, Turner, Kevin, Chiu, Ya-Lin, Wild, Peter, Sboner, Andrea, Ramazangolu, Sinan, Hieronymus, Haley,

Journal:

The Journal of Urology

Year:

2014

Language:

english

File:

PDF, 72 KB

english, 2014

28

The real cost of sequencing: higher than you think!

Andrea Sboner,Xinmeng Jasmine Mu,Dov Greenbaum,Raymond K Auerbach…

Journal:

Year:

2011

Language:

english

File:

PDF, 472 KB

english, 2011

29

UbcH10 is overexpressed in malignant breast carcinomas

Maria Teresa Berlingieri, Pierlorenzo Pallante, Andrea Sboner, Mattia Barbareschi, Mimma Bianco, Angelo Ferraro, Gelsomina Mansueto, Eleonora Borbone, Eliana Guerriero, Giancarlo Troncone, Alfredo Fus

Journal:

European Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 679 KB

english, 2007

30

The role of disorder in interaction networks: a structural analysis

Kim, Philip M, Sboner, Andrea, Xia, Yu, Gerstein, Mark

Journal:

Molecular Systems Biology

Year:

2008

Language:

english

File:

PDF, 201 KB

english, 2008

31

Patient-Level DNA Damage and Repair Pathway Profiles and Prognosis After Prostatectomy for High-Risk Prostate Cancer

Evans, Joseph R., Zhao, Shuang G., Chang, S. Laura, Tomlins, Scott A., Erho, Nicholas, Sboner, Andrea, Schiewer, Matthew J., Spratt, Daniel E., Kothari, Vishal, Klein, Eric A., Den, Robert B., Dicker,

Journal:

Year:

2016

Language:

english

File:

PDF, 552 KB

english, 2016

32

Novel MIR143-NOTCH fusions in benign and malignant glomus tumors

Mosquera, Juan-Miguel, Sboner, Andrea, Zhang, Lei, Chen, Chun-Liang, Sung, Yun-Shao, Chen, Hsiao-Wei, Agaram, Narasimhan P., Briskin, Daniel, Basha, Basma M., Singer, Samuel, Rubin, Mark A., Tuschl, T

Journal:

Genes, Chromosomes and Cancer

Year:

2013

Language:

english

File:

PDF, 859 KB

english, 2013

33

MP31-01 DEVELOPMENT OF NOVEL METASTATIC PROSTATE CANCER CELL LINES BY “ORGANOID” IN VITRO CULTURE TECHNOLOGY

Vela, Ian, Gao, Dong, Gopalan, Anuradha, Sboner, Andrea, Undvall, Eva, Wanjala, Jackline, Iaquinta, Phillip, Wongvipat, John, Dowling, Catherine, Karthaus, Wouter, Clevers, Hans, Solomon, Stephen B.,

Journal:

The Journal of Urology

Year:

2014

Language:

english

File:

PDF, 42 KB

english, 2014

34

ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer

Cai, Ling, Tsai, Yi-Hsuan, Wang, Ping, Wang, Jun, Li, Dongxu, Fan, Huitao, Zhao, Yilin, Bareja, Rohan, Lu, Rui, Wilson, Elizabeth M., Sboner, Andrea, Whang, Young E., Zheng, Deyou, Parker, Joel S., Ea

Journal:

Year:

2018

Language:

english

File:

PDF, 4.23 MB

english, 2018

35

Association of cytokeratin 7 and 19 expression with genomic stability and favorable prognosis in clear cell renal cell cancer

Kirsten D. Mertz, Francesca Demichelis, Andrea Sboner, Michelle S. Hirsch, Paola Dal Cin, Kirsten Struckmann, Martina Storz, Simone Scherrer, Daniel M. Schmid, Räto T. Strebel, Nicole M. Probst-Hensch

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 613 KB

english, 2008

36

Novel ZC3H7B-BCOR , MEAF6-PHF1 , and EPC1-PHF1 fusions in ossifying fibromyxoid tumors-molecular characterization shows genetic overlap with endometrial stromal sarcoma

Antonescu, Cristina R., Sung, Yun-Shao, Chen, Chun-Liang, Zhang, Lei, Chen, Hsiao-Wei, Singer, Samuel, Agaram, Narasimhan P., Sboner, Andrea, Fletcher, Christopher D.

Journal:

Genes, Chromosomes and Cancer

Year:

2014

Language:

english

File:

PDF, 767 KB

english, 2014

37

Loss of an Androgen-Inactivating and Isoform-Specific HSD17B4 Splice Form Enables Emergence of Castration-Resistant Prostate Cancer

Ko, Hyun-Kyung, Berk, Michael, Chung, Yoon-Mi, Willard, Belinda, Bareja, Rohan, Rubin, Mark, Sboner, Andrea, Sharifi, Nima

Journal:

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

38

217 Precision Sequencing Algorithm in Pediatric Neurosurgery

Greenfield, Jeffrey P, Maachani, Uday, Taha, Birra, Bareja, Rohan, Wang, Kenneth, Sboner, Andreas, Haussner, Therese, Hoffman, Caitlin E, Mason, Christopher E, Souweidane, Mark M, Elemento, Olivier, P

Journal:

Year:

2018

File:

PDF, 55 KB

2018

39

Molecular sampling of prostate cancer: a dilemma for predicting disease progression

Andrea Sboner, Francesca Demichelis, Stefano Calza, Yudi Pawitan, Sunita R Setlur, Yujin Hoshida, Sven Perner, Hans-Olov Adami, Katja Fall, Lorelei A Mucci, Philip W Kantoff, Meir Stampfer, Swen-Olof

Journal:

BMC Medical Genomics

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010

40

Unraveling the clonal hierarchy of somatic genomic aberrations

Prandi, Davide, Baca, Sylvan C, Romanel, Alessandro, Barbieri, Christopher E, Mosquera, Juan-Miguel, Fontugne, Jacqueline, Beltran, Himisha, Sboner, Andrea, Garraway, Levi A, Rubin, Mark A, Demichelis

Journal:

Year:

2014

Language:

english

File:

PDF, 3.55 MB

english, 2014

41

N-Myc Induces an EZH2-Mediated Transcriptional Program Driving Neuroendocrine Prostate Cancer

Dardenne, Etienne, Beltran, Himisha, Benelli, Matteo, Gayvert, Kaitlyn, Berger, Adeline, Puca, Loredana, Cyrta, Joanna, Sboner, Andrea, Noorzad, Zohal, MacDonald, Theresa, Cheung, Cynthia, Yuen, Ka Sh

Journal:

Year:

2016

Language:

english

File:

PDF, 5.96 MB

english, 2016

42

Identification of a therapeutic target using molecular sequencing for treatment of recurrent uterine serous adenocarcinoma

Musselman, Kelsey, Glynn, Shannon, Mosquera, Juan Miguel, Elemento, Olivier, Sboner, Andrea, Beltran, Himisha, Holcomb, Kevin

Journal:

Gynecologic Oncology Reports

Year:

2019

Language:

english

File:

PDF, 1.77 MB

english, 2019

43

Limitations of Detecting Genetic Variants from the RNA-Seq Data in Tissue and FNA Samples

Kaya, Cihan, Dorsaint, Princesca, Mercurio, Stephanie, Campbell, Alexander M, Wha Eng, Kenneth, Nikiforova, Marina N., Elemento, Olivier, Nikiforov, Yuri E., Sboner, Andrea

Journal:

Year:

2020

File:

PDF, 946 KB

2020

44

ASEQ: fast allele-specific studies from next-generation sequencing data

Romanel, Alessandro, Lago, Sara, Prandi, Davide, Sboner, Andrea, Demichelis, Francesca

Journal:

BMC Medical Genomics

Year:

2015

Language:

english

File:

PDF, 2.53 MB

english, 2015

45

Epigenomic Alterations in Localized and Advanced Prostate Cancer

Lin, Pei-Chun, Giannopoulou, Eugenia G., Park, Kyung, Mosquera, Juan Miguel, Sboner, Andrea, Tewari, Ashutosh K., Garraway, Levi A., Beltran, Himisha, Rubin, Mark A., Elemento, Olivier

Journal:

Year:

2013

Language:

english

File:

PDF, 1.98 MB

english, 2013

46

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors

Lee, William, Teckie, Sewit, Wiesner, Thomas, Ran, Leili, Prieto Granada, Carlos N, Lin, Mingyan, Zhu, Sinan, Cao, Zhen, Liang, Yupu, Sboner, Andrea, Tap, William D, Fletcher, Jonathan A, Huberman, Ke

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

47

BRCA2-Associated Prostate Cancer in a Patient With Spinal and Bulbar Muscular Atrophy

Conteduca, Vincenza, Sigouros, Michael, Sboner, Andrea, Pritchard, Colin C., Beltran, Himisha

Journal:

JCO Precision Oncology

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

48

Distinct genomic aberrations associated with ERG rearranged prostate cancer

Francesca Demichelis, Sunita R. Setlur, Rameen Beroukhim, Sven Perner, Jan O. Korbel, Christopher J. LaFargue, Dorothee Pflueger, Cara Pina, Matthias D. Hofer, Andrea Sboner, Maria A. Svensson, David

Journal:

Genes, Chromosomes and Cancer

Year:

2009

Language:

english

File:

PDF, 915 KB

english, 2009

49

The genomic complexity of primary human prostate cancer

Berger, Michael F., Lawrence, Michael S., Demichelis, Francesca, Drier, Yotam, Cibulskis, Kristian, Sivachenko, Andrey Y., Sboner, Andrea, Esgueva, Raquel, Pflueger, Dorothee, Sougnez, Carrie

Journal:

Year:

2011

Language:

english

File:

PDF, 873 KB

english, 2011

50

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

Sboner, Andrea, Habegger, Lukas, Pflueger, Dorothee, Terry, Stephane, Chen, David Z, Rozowsky, Joel S, Tewari, Ashutosh K, Kitabayashi, Naoki, Moss, Benjamin J, Chee, Mark S, Demichelis, Francesca, Ru

Journal:

Year:

2010

Language:

english

File:

PDF, 1.39 MB

english, 2010

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